A repository run by the Centers for Disease Control and Prevention (CDC) to collect forecasts of incident respiratory syncytial virus (RSV) hospital admissions and emergency department visits.

Complete pipeline that mirrors the manuscript: reference based assembly with depth masking, de novo checks, phylogeny with configurable models including ModelFinder, and targeted mutation analysis for G and F versus NC_038235.1 and NC_001781.1. Includes CI and environment files for easy setup.